IL_9NLQ_135

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9NLQ|1|R3|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_135 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1425

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9NLQ|1|R3|G|446
9NLQ|1|R3|G|447
9NLQ|1|R3|A|448
9NLQ|1|R3|G|449
9NLQ|1|R3|G|450
*
9NLQ|1|R3|C|483
9NLQ|1|R3|G|484
9NLQ|1|R3|U|485
9NLQ|1|R3|U|486
9NLQ|1|R3|A|487
9NLQ|1|R3|C|488

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sd

30S ribosomal protein S4

Chain sp

Small ribosomal subunit protein bS16