IL_9NLQ_139

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9NLQ|1|R3|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_139 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0953

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

9NLQ|1|R3|C|569
9NLQ|1|R3|G|570
9NLQ|1|R3|U|571
9NLQ|1|R3|A|572
9NLQ|1|R3|A|573
9NLQ|1|R3|A|574
9NLQ|1|R3|G|575
*
9NLQ|1|R3|C|880
9NLQ|1|R3|G|881

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sq

Small ribosomal subunit protein uS17