IL_9NLQ_154

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_154 not in the Motif Atlas

Homologous match to IL_6CZR_150

Geometric discrepancy: 0.182

The information below is about IL_6CZR_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLQ|1|R3|G|953
9NLQ|1|R3|G|954
*
9NLQ|1|R3|C|1226
9NLQ|1|R3|A|1227
9NLQ|1|R3|C|1228

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain T

Transfer RNA; tRNA

Chain sm

30S ribosomal protein S13

Chain ss

30S ribosomal protein S19