IL_9NLS_006

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_006 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.0841

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9NLS|1|R1|G|188
9NLS|1|R1|G|189
9NLS|1|R1|A|190
9NLS|1|R1|A|191
9NLS|1|R1|C|192
9NLS|1|R1|U|193
9NLS|1|R1|G|194
*
9NLS|1|R1|C|201
9NLS|1|R1|U|202
9NLS|1|R1|A|203
9NLS|1|R1|A|204
9NLS|1|R1|G|205
9NLS|1|R1|U|206
9NLS|1|R1|A|207
9NLS|1|R1|C|208

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 28

50S ribosomal protein L28