IL_9NLS_009

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

9NLS|1|R1|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2585

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9NLS|1|R1|C|274
9NLS|1|R1|C|275
9NLS|1|R1|U|276
9NLS|1|R1|G|277
9NLS|1|R1|A|278
9NLS|1|R1|A|279
9NLS|1|R1|U|280
9NLS|1|R1|C|281
*
9NLS|1|R1|G|359
9NLS|1|R1|U|360
9NLS|1|R1|G|361
9NLS|1|R1|A|362
9NLS|1|R1|G|363

Current chains

Chain R1

23S ribosomal RNA

Nearby chains