IL_9NLS_011
3D structure
- PDB id
- 9NLS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 9NLS|1|R1|A|504, 9NLS|1|R1|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NLS_011 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.0867
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
9NLS|1|R1|G|481
9NLS|1|R1|A|482
9NLS|1|R1|A|483
9NLS|1|R1|C|484
*
9NLS|1|R1|G|496
9NLS|1|R1|A|497
9NLS|1|R1|G|498
9NLS|1|R1|U|499
9NLS|1|R1|G|500
9NLS|1|R1|A|501
9NLS|1|R1|A|502
9NLS|1|R1|A|503
9NLS|1|R1|A|504
9NLS|1|R1|A|505
9NLS|1|R1|G|506
9NLS|1|R1|A|507
9NLS|1|R1|A|508
9NLS|1|R1|C|509
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 22
- Large ribosomal subunit protein uL22
- Chain 24
- Large ribosomal subunit protein uL24
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