IL_9NLS_023

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9NLS|1|R1|U|846, 9NLS|1|R1|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_023 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.2534

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

9NLS|1|R1|A|844
9NLS|1|R1|A|845
9NLS|1|R1|U|846
9NLS|1|R1|U|847
9NLS|1|R1|C|848
*
9NLS|1|R1|G|930
9NLS|1|R1|U|931
9NLS|1|R1|U|932
9NLS|1|R1|A|933
9NLS|1|R1|U|934

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 30

50S ribosomal protein L30