IL_9NLS_036

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9NLS|1|R1|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_036 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1335

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

9NLS|1|R1|U|1018
9NLS|1|R1|U|1019
9NLS|1|R1|A|1020
9NLS|1|R1|A|1021
9NLS|1|R1|G|1022
9NLS|1|R1|U|1023
9NLS|1|R1|G|1024
*
9NLS|1|R1|C|1140
9NLS|1|R1|U|1141
9NLS|1|R1|A|1142
9NLS|1|R1|A|1143
9NLS|1|R1|A|1144

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 36

50S ribosomal protein L36

Chain 6

Large ribosomal subunit protein uL6