IL_9NLS_040

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCCAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

9NLS|1|R1|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLS|1|R1|C|1043
9NLS|1|R1|C|1044
9NLS|1|R1|C|1045
9NLS|1|R1|A|1046
9NLS|1|R1|G|1047
9NLS|1|R1|A|1048
9NLS|1|R1|C|1049
9NLS|1|R1|A|1050
9NLS|1|R1|G|1051
9NLS|1|R1|C|1052
9NLS|1|R1|C|1053
*
9NLS|1|R1|G|1106
9NLS|1|R1|G|1107
9NLS|1|R1|U|1108
9NLS|1|R1|C|1109
9NLS|1|R1|G|1110
9NLS|1|R1|A|1111
9NLS|1|R1|G|1112

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein uL6