IL_9NLS_044

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_044 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0838

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9NLS|1|R1|A|1262
9NLS|1|R1|U|1263
9NLS|1|R1|A|1264
9NLS|1|R1|A|1265
9NLS|1|R1|G|1266
9NLS|1|R1|U|1267
9NLS|1|R1|A|1268
9NLS|1|R1|A|1269
*
9NLS|1|R1|U|2011
9NLS|1|R1|G|2012
9NLS|1|R1|A|2013
9NLS|1|R1|A|2014
9NLS|1|R1|A|2015
9NLS|1|R1|U|2016
9NLS|1|R1|U|2017

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 22

Large ribosomal subunit protein uL22

Chain 32

50S ribosomal protein L32

Chain 4

Large ribosomal subunit protein uL4