IL_9NLS_051

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_051 not in the Motif Atlas

Homologous match to IL_5J7L_294

Geometric discrepancy: 0.4017

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

9NLS|1|R1|U|1415
9NLS|1|R1|G|1416
*
9NLS|1|R1|C|1582
9NLS|1|R1|A|1583
9NLS|1|R1|U|1584
9NLS|1|R1|C|1585
9NLS|1|R1|A|1586
9NLS|1|R1|G|1587

Current chains

Chain R1

23S ribosomal RNA

Nearby chains