IL_9NLS_066

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9NLS|1|R1|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_066 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0918

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9NLS|1|R1|C|1686
9NLS|1|R1|G|1687
9NLS|1|R1|U|1688
9NLS|1|R1|A|1689
9NLS|1|R1|A|1690
9NLS|1|R1|C|1691
*
9NLS|1|R1|G|1696
9NLS|1|R1|G|1697
9NLS|1|R1|A|1698
9NLS|1|R1|G|1699
9NLS|1|R1|A|1700
9NLS|1|R1|A|1701
9NLS|1|R1|G|1702

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain R3

Small subunit ribosomal RNA; SSU rRNA