IL_9NLS_085

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUGUGUAGGAUAG*CCUUU

Length

19 nucleotides

Bulged bases

9NLS|1|R1|U|2111, 9NLS|1|R1|A|2114, 9NLS|1|R1|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLS|1|R1|G|2107
9NLS|1|R1|A|2108
9NLS|1|R1|U|2109
9NLS|1|R1|G|2110
9NLS|1|R1|U|2111
9NLS|1|R1|G|2112
9NLS|1|R1|U|2113
9NLS|1|R1|A|2114
9NLS|1|R1|G|2115
9NLS|1|R1|G|2116
9NLS|1|R1|A|2117
9NLS|1|R1|U|2118
9NLS|1|R1|A|2119
9NLS|1|R1|G|2120
*
9NLS|1|R1|C|2178
9NLS|1|R1|C|2179
9NLS|1|R1|U|2180
9NLS|1|R1|U|2181
9NLS|1|R1|U|2182

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain Y

Probable ATP-binding protein YbiT