IL_9NLS_087

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAG*CGACCUUGAAAUACC

Length

19 nucleotides

Bulged bases

9NLS|1|R1|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLS|1|R1|G|2124
9NLS|1|R1|G|2125
9NLS|1|R1|A|2126
9NLS|1|R1|G|2127
*
9NLS|1|R1|C|2161
9NLS|1|R1|G|2162
9NLS|1|R1|A|2163
9NLS|1|R1|C|2164
9NLS|1|R1|C|2165
9NLS|1|R1|U|2166
9NLS|1|R1|U|2167
9NLS|1|R1|G|2168
9NLS|1|R1|A|2169
9NLS|1|R1|A|2170
9NLS|1|R1|A|2171
9NLS|1|R1|U|2172
9NLS|1|R1|A|2173
9NLS|1|R1|C|2174
9NLS|1|R1|C|2175

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL1

Chain Y

Probable ATP-binding protein YbiT