IL_9NLS_109

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_109 not in the Motif Atlas

Homologous match to IL_5J7L_351

Geometric discrepancy: 0.1063

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

9NLS|1|R1|C|2806
9NLS|1|R1|U|2807
9NLS|1|R1|G|2808
9NLS|1|R1|A|2809
9NLS|1|R1|A|2810
9NLS|1|R1|G|2811
*
9NLS|1|R1|C|2889
9NLS|1|R1|G|2890
9NLS|1|R1|U|2891
9NLS|1|R1|G|2892

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 22

Large ribosomal subunit protein uL22

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32