IL_9NLS_115

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_115 not in the Motif Atlas

Homologous match to IL_9DFE_112

Geometric discrepancy: 0.1928

The information below is about IL_9DFE_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

9NLS|1|R2|C|30
9NLS|1|R2|C|31
*
9NLS|1|R2|G|51
9NLS|1|R2|A|52
9NLS|1|R2|A|53
9NLS|1|R2|G|54

Current chains

Chain R2

5S ribosomal RNA

Nearby chains

Chain 18

Large ribosomal subunit protein uL18

Chain 5

50S ribosomal protein L5