IL_9NLS_132

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

9NLS|1|R3|G|251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_132 not in the Motif Atlas

Homologous match to IL_4LFB_012

Geometric discrepancy: 0.1754

The information below is about IL_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9NLS|1|R3|U|249
9NLS|1|R3|A|250
9NLS|1|R3|G|251
9NLS|1|R3|U|252
*
9NLS|1|R3|A|274
9NLS|1|R3|G|275

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sq

Small ribosomal subunit protein uS17