3D structure

PDB id
9NLS (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CAGC*GCAGAAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9NLS|1|R3|C|440
9NLS|1|R3|A|441
9NLS|1|R3|G|442
9NLS|1|R3|C|443
*
9NLS|1|R3|G|491
9NLS|1|R3|C|492
9NLS|1|R3|A|493
9NLS|1|R3|G|494
9NLS|1|R3|A|495
9NLS|1|R3|A|496
9NLS|1|R3|G|497

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain sd
30S ribosomal protein S4

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.4392 s