IL_9NLS_163

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_163 not in the Motif Atlas

Homologous match to IL_5J7L_050

Geometric discrepancy: 0.1227

The information below is about IL_5J7L_050

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

9NLS|1|R3|G|1061
9NLS|1|R3|U|1062
9NLS|1|R3|C|1063
*
9NLS|1|R3|G|1193
9NLS|1|R3|U|1194
9NLS|1|R3|C|1195

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sc

Small ribosomal subunit protein uS3

Chain se

Small ribosomal subunit protein uS5

Chain si

Small ribosomal subunit protein uS9

Chain sj

30S ribosomal protein S10

Chain sn

Small ribosomal subunit protein uS14