IL_9NLS_166

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_166 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.1679

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9NLS|1|R3|C|1158
9NLS|1|R3|U|1159
9NLS|1|R3|G|1160
9NLS|1|R3|C|1161
*
9NLS|1|R3|G|1175
9NLS|1|R3|A|1176
9NLS|1|R3|G|1177
9NLS|1|R3|G|1178
9NLS|1|R3|A|1179
9NLS|1|R3|A|1180
9NLS|1|R3|G|1181

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain si

Small ribosomal subunit protein uS9