IL_9NLS_169

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_169 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.1995

The information below is about IL_5J7L_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9NLS|1|R3|C|1259
9NLS|1|R3|G|1260
9NLS|1|R3|A|1261
9NLS|1|R3|C|1262
9NLS|1|R3|C|1263
*
9NLS|1|R3|G|1272
9NLS|1|R3|C|1273
9NLS|1|R3|A|1274
9NLS|1|R3|A|1275
9NLS|1|R3|G|1276

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14

Chain ss

30S ribosomal protein S19