IL_9O2X_065

3D structure

PDB id

9O2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CG*UAG

Length

5 nucleotides

Bulged bases

9O2X|1|Y|A|42|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O2X_065 not in the Motif Atlas

Geometric match to IL_8UO6_001

Geometric discrepancy: 0.3919

The information below is about IL_8UO6_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9O2X|1|Y|C|27
9O2X|1|Y|G|28
*
9O2X|1|Y|U|42
9O2X|1|Y|A|42|||A
9O2X|1|Y|G|43

Current chains

Chain Y

A-site tRNAPyl

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain S

Small ribosomal subunit protein uS19

Chain a

Large subunit ribosomal RNA; LSU rRNA