IL_9O2Y_095

3D structure

PDB id

9O2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.14 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O2Y_095 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.1496

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9O2Y|1|a|G|875
9O2Y|1|a|C|876
9O2Y|1|a|A|877
9O2Y|1|a|A|878
9O2Y|1|a|G|879
*
9O2Y|1|a|C|898
9O2Y|1|a|A|899
9O2Y|1|a|A|900
9O2Y|1|a|C|901
9O2Y|1|a|C|902

Current chains

Chain a

23S rRNA

Nearby chains

Chain Y

A-site tRNAPyl

Chain l

50S ribosomal protein L16