IL_9O2Y_176
3D structure
- PDB id
- 9O2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.14 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9O2Y_176 not in the Motif Atlas
- Homologous match to IL_7A0S_113
- Geometric discrepancy: 0.2816
- The information below is about IL_7A0S_113
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.13
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 13
Unit IDs
9O2Y|1|b|A|34
9O2Y|1|b|C|35
9O2Y|1|b|C|36
9O2Y|1|b|C|37
9O2Y|1|b|C|38
*
9O2Y|1|b|G|44
9O2Y|1|b|A|45
9O2Y|1|b|A|46
9O2Y|1|b|C|47
9O2Y|1|b|U|48
Current chains
- Chain b
- 5S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L31
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain n
- Large ribosomal subunit protein uL18
Coloring options: