IL_9O3I_210

3D structure

PDB id

9O3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

9O3I|1|2A|U|1142, 9O3I|1|2A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3I_210 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.0928

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

9O3I|1|2A|C|1018
9O3I|1|2A|U|1019
9O3I|1|2A|A|1020
9O3I|1|2A|A|1021
9O3I|1|2A|G|1022
9O3I|1|2A|U|1023
9O3I|1|2A|G|1024
*
9O3I|1|2A|C|1140
9O3I|1|2A|U|1141
9O3I|1|2A|U|1142
9O3I|1|2A|A|1142|||A
9O3I|1|2A|A|1143
9O3I|1|2A|G|1144

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2N

50S ribosomal protein L13