IL_9O3J_040

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9O3J|1|1A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3J_040 not in the Motif Atlas

Geometric match to IL_9DFE_020

Geometric discrepancy: 0.2034

The information below is about IL_9DFE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

9O3J|1|1A|G|1087
9O3J|1|1A|A|1088
9O3J|1|1A|G|1089
9O3J|1|1A|U|1090
9O3J|1|1A|G|1091
*
9O3J|1|1A|C|1100
9O3J|1|1A|U|1101
9O3J|1|1A|C|1102

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36