IL_9O3J_211

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGUAAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

9O3J|1|2A|U|1026, 9O3J|1|2A|A|1127, 9O3J|1|2A|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3J_211 not in the Motif Atlas

Geometric match to IL_9DFE_039

Geometric discrepancy: 0.066

The information below is about IL_9DFE_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.4

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

9O3J|1|2A|G|1024
9O3J|1|2A|G|1025
9O3J|1|2A|U|1026
9O3J|1|2A|A|1027
9O3J|1|2A|A|1028
9O3J|1|2A|A|1029
9O3J|1|2A|G|1030
*
9O3J|1|2A|C|1124
9O3J|1|2A|G|1125
9O3J|1|2A|A|1126
9O3J|1|2A|A|1127
9O3J|1|2A|A|1128
9O3J|1|2A|A|1129
9O3J|1|2A|U|1130
9O3J|1|2A|G|1131
9O3J|1|2A|A|1132
9O3J|1|2A|U|1133
9O3J|1|2A|C|1135
9O3J|1|2A|G|1136
9O3J|1|2A|G|1137
9O3J|1|2A|G|1138
9O3J|1|2A|G|1139
9O3J|1|2A|C|1140

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2Q

50S ribosomal protein L16