IL_9O3J_221

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3J_221 not in the Motif Atlas

Geometric match to IL_9DFE_052

Geometric discrepancy: 0.1612

The information below is about IL_9DFE_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9O3J|1|2A|U|1357
9O3J|1|2A|G|1358
9O3J|1|2A|A|1359
9O3J|1|2A|A|1360
9O3J|1|2A|G|1361
*
9O3J|1|2A|C|1370
9O3J|1|2A|G|1371
9O3J|1|2A|U|1372
9O3J|1|2A|A|1373
9O3J|1|2A|G|1374

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2