IL_9O3J_231

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

9O3J|1|2A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3J_231 not in the Motif Atlas

Geometric match to IL_9DFE_062

Geometric discrepancy: 0.1025

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9O3J|1|2A|G|1526
9O3J|1|2A|G|1527
9O3J|1|2A|A|1528
9O3J|1|2A|A|1528|||A
9O3J|1|2A|G|1529
*
9O3J|1|2A|U|1540
9O3J|1|2A|G|1541
9O3J|1|2A|A|1542
9O3J|1|2A|C|1543
9O3J|1|2A|A|1544
9O3J|1|2A|A|1545
9O3J|1|2A|C|1546

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains