IL_9O3J_255

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAGCCUGUGAACC*GGGGAGGCGCCGGUGAAAUAC

Length

35 nucleotides

Bulged bases

9O3J|1|2A|G|2125, 9O3J|1|2A|U|2132, 9O3J|1|2A|G|2168

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3J|1|2A|G|2124
9O3J|1|2A|G|2125
9O3J|1|2A|A|2126
9O3J|1|2A|G|2127
9O3J|1|2A|C|2128
9O3J|1|2A|C|2129
9O3J|1|2A|U|2130
9O3J|1|2A|G|2131
9O3J|1|2A|U|2132
9O3J|1|2A|G|2133
9O3J|1|2A|A|2134
9O3J|1|2A|A|2135
9O3J|1|2A|C|2136
9O3J|1|2A|C|2137
*
9O3J|1|2A|G|2154
9O3J|1|2A|G|2155
9O3J|1|2A|G|2156
9O3J|1|2A|G|2157
9O3J|1|2A|A|2158
9O3J|1|2A|G|2159
9O3J|1|2A|G|2160
9O3J|1|2A|C|2161
9O3J|1|2A|G|2162
9O3J|1|2A|C|2163
9O3J|1|2A|C|2164
9O3J|1|2A|G|2165
9O3J|1|2A|G|2166
9O3J|1|2A|U|2167
9O3J|1|2A|G|2168
9O3J|1|2A|A|2169
9O3J|1|2A|A|2170
9O3J|1|2A|A|2171
9O3J|1|2A|U|2172
9O3J|1|2A|A|2173
9O3J|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA