3D structure

PDB id
9O3J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GUC*GCC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9O3J_341 not in the Motif Atlas
Geometric match to IL_4LFB_063
Geometric discrepancy: 0.1104
The information below is about IL_4LFB_063
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

9O3J|1|2a|G|1435
9O3J|1|2a|U|1436
9O3J|1|2a|C|1437
*
9O3J|1|2a|G|1464
9O3J|1|2a|C|1465
9O3J|1|2a|C|1466

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2A
Large subunit ribosomal RNA; LSU rRNA
Chain 2T
50S ribosomal protein L19
Chain 2t
30S ribosomal protein S20

Coloring options:


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