IL_9O3K_016

3D structure

PDB id

9O3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9O3K|1|1A|G|801, 9O3K|1|1A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3K_016 not in the Motif Atlas

Geometric match to IL_9DFE_016

Geometric discrepancy: 0.059

The information below is about IL_9DFE_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9O3K|1|1A|G|674
9O3K|1|1A|A|675
9O3K|1|1A|A|676
9O3K|1|1A|A|677
9O3K|1|1A|C|678
*
9O3K|1|1A|G|799
9O3K|1|1A|A|800
9O3K|1|1A|G|801
9O3K|1|1A|A|802
9O3K|1|1A|U|803
9O3K|1|1A|A|804
9O3K|1|1A|G|805
9O3K|1|1A|C|806

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15