IL_9O3K_106

3D structure

PDB id

9O3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

9O3K|1|1A|C|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3K_106 not in the Motif Atlas

Geometric match to IL_9DFE_107

Geometric discrepancy: 0.048

The information below is about IL_9DFE_107

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

9O3K|1|1A|G|2838
9O3K|1|1A|G|2839
*
9O3K|1|1A|U|2878
9O3K|1|1A|C|2879
9O3K|1|1A|C|2880

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17