IL_9O3V_088

3D structure

PDB id

9O3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3V_088 not in the Motif Atlas

Geometric match to IL_8GLP_089

Geometric discrepancy: 0.0435

The information below is about IL_8GLP_089

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.5

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

37

Unit IDs

9O3V|1|L5|G|2406
9O3V|1|L5|G|2407
9O3V|1|L5|U|2408
9O3V|1|L5|U|2409
*
9O3V|1|L5|A|2783
9O3V|1|L5|C|2784

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LX

Large ribosomal subunit protein uL23

Chain Lg

Large ribosomal subunit protein eL34

Chain Lj

Large ribosomal subunit protein eL37

Chain Ll

Large ribosomal subunit protein eL39