IL_9O3V_213

3D structure

PDB id

9O3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GCCG

Length

6 nucleotides

Bulged bases

9O3V|1|S2|C|839, 9O3V|1|S2|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3V_213 not in the Motif Atlas

Geometric match to IL_7EU9_001

Geometric discrepancy: 0.2318

The information below is about IL_7EU9_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_09092.2

Basepair signature

cWW-cWW

Number of instances in this motif group

15

Unit IDs

9O3V|1|S2|C|833
9O3V|1|S2|C|834
*
9O3V|1|S2|G|838
9O3V|1|S2|C|839
9O3V|1|S2|C|840
9O3V|1|S2|G|841

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SY

40S ribosomal protein S24