IL_9O3W_006
3D structure
- PDB id
- 9O3W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9O3W_006 not in the Motif Atlas
- Homologous match to IL_8GLP_006
- Geometric discrepancy: 0.0276
- The information below is about IL_8GLP_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.5
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9O3W|1|L5|C|81
9O3W|1|L5|U|82
9O3W|1|L5|C|83
9O3W|1|L5|A|84
9O3W|1|L5|G|85
9O3W|1|L5|U|86
9O3W|1|L5|A|87
9O3W|1|L5|A|88
*
9O3W|1|L5|U|96
9O3W|1|L5|G|97
9O3W|1|L5|A|98
9O3W|1|L5|A|99
9O3W|1|L5|C|100
9O3W|1|L5|A|101
9O3W|1|L5|G|102
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LN
- Large ribosomal subunit protein eL15
- Chain LQ
- Large ribosomal subunit protein eL18
- Chain La
- 60S ribosomal protein L27a
- Chain Lo
- Large ribosomal subunit protein eL42
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