IL_9O3W_020
3D structure
- PDB id
- 9O3W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- GUGAAAC*G(OMU)GGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9O3W_020 not in the Motif Atlas
- Homologous match to IL_8GLP_021
- Geometric discrepancy: 0.0309
- The information below is about IL_8GLP_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.3
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9O3W|1|L5|G|415
9O3W|1|L5|U|416
9O3W|1|L5|G|417
9O3W|1|L5|A|418
9O3W|1|L5|A|419
9O3W|1|L5|A|420
9O3W|1|L5|C|421
*
9O3W|1|L8|G|13
9O3W|1|L8|OMU|14
9O3W|1|L8|G|15
9O3W|1|L8|G|16
9O3W|1|L8|A|17
9O3W|1|L8|U|18
9O3W|1|L8|C|19
Current chains
- Chain L5
- 28S rRNA
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LP
- Large ribosomal subunit protein uL22
- Chain Le
- Large ribosomal subunit protein eL32
Coloring options: