IL_9O3W_027

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

9O3W|1|L5|G|666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_027 not in the Motif Atlas

Homologous match to IL_8GLP_028

Geometric discrepancy: 0.5105

The information below is about IL_8GLP_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87975.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

9O3W|1|L5|G|487
9O3W|1|L5|G|488
*
9O3W|1|L5|C|665
9O3W|1|L5|G|666
9O3W|1|L5|A|667
9O3W|1|L5|C|668
9O3W|1|L5|C|669

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain Lr

Large ribosomal subunit protein eL28