IL_9O3W_034

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

9O3W|1|L5|G|729, 9O3W|1|L5|G|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_034 not in the Motif Atlas

Homologous match to IL_8GLP_036

Geometric discrepancy: 0.0451

The information below is about IL_8GLP_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9O3W|1|L5|C|727
9O3W|1|L5|U|728
9O3W|1|L5|G|729
9O3W|1|L5|G|730
9O3W|1|L5|G|731
*
9O3W|1|L5|C|938
9O3W|1|L5|G|939

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LM

Large ribosomal subunit protein eL14

Chain LS

Large ribosomal subunit protein eL20