IL_9O3W_035
3D structure
- PDB id
- 9O3W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- AAGG*CAGCAGCACU
- Length
- 14 nucleotides
- Bulged bases
- 9O3W|1|L5|A|932, 9O3W|1|L5|C|934, 9O3W|1|L5|A|935, 9O3W|1|L5|C|936
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9O3W_035 not in the Motif Atlas
- Homologous match to IL_8GLP_037
- Geometric discrepancy: 0.1361
- The information below is about IL_8GLP_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70469.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
9O3W|1|L5|A|732
9O3W|1|L5|A|733
9O3W|1|L5|G|734
9O3W|1|L5|G|735
*
9O3W|1|L5|C|928
9O3W|1|L5|A|929
9O3W|1|L5|G|930
9O3W|1|L5|C|931
9O3W|1|L5|A|932
9O3W|1|L5|G|933
9O3W|1|L5|C|934
9O3W|1|L5|A|935
9O3W|1|L5|C|936
9O3W|1|L5|U|937
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LM
- Large ribosomal subunit protein eL14
- Chain LS
- Large ribosomal subunit protein eL20
Coloring options: