IL_9O3W_054

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

(OMG)A(A2M)AG*CUAGUAGC

Length

13 nucleotides

Bulged bases

9O3W|1|L5|A|1650, 9O3W|1|L5|G|1654

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|OMG|1522
9O3W|1|L5|A|1523
9O3W|1|L5|A2M|1524
9O3W|1|L5|A|1525
9O3W|1|L5|G|1526
*
9O3W|1|L5|C|1648
9O3W|1|L5|U|1649
9O3W|1|L5|A|1650
9O3W|1|L5|G|1651
9O3W|1|L5|U|1652
9O3W|1|L5|A|1653
9O3W|1|L5|G|1654
9O3W|1|L5|C|1655

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LL

Large ribosomal subunit protein eL13

Chain LN

Large ribosomal subunit protein eL15

Chain La

60S ribosomal protein L27a

Chain Lj

Large ribosomal subunit protein eL37