IL_9O3W_078
3D structure
- PDB id
- 9O3W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9O3W|1|L5|C|1935, 9O3W|1|L5|A|2041, 9O3W|1|L5|U|2044, 9O3W|1|L5|G|2045
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9O3W|1|L5|G|1933
9O3W|1|L5|A|1934
9O3W|1|L5|C|1935
9O3W|1|L5|C|1936
9O3W|1|L5|C|1937
9O3W|1|L5|C|1938
9O3W|1|L5|A|1939
9O3W|1|L5|G|1940
9O3W|1|L5|A|1941
9O3W|1|L5|A|1942
9O3W|1|L5|A|1943
9O3W|1|L5|A|1944
*
9O3W|1|L5|U|2038
9O3W|1|L5|G|2039
9O3W|1|L5|A|2040
9O3W|1|L5|A|2041
9O3W|1|L5|A|2042
9O3W|1|L5|A|2043
9O3W|1|L5|U|2044
9O3W|1|L5|G|2045
9O3W|1|L5|G|2046
9O3W|1|L5|A|2047
9O3W|1|L5|U|2048
9O3W|1|L5|G|2049
9O3W|1|L5|G|2050
9O3W|1|L5|C|2051
9O3W|1|L5|G|2052
9O3W|1|L5|C|2053
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LF
- 60S ribosomal protein L7
- Chain LI
- Large ribosomal subunit protein uL16
- Chain LO
- Large ribosomal subunit protein uL13
- Chain LS
- Large ribosomal subunit protein eL20
- Chain Lf
- Large ribosomal subunit protein eL33
- Chain Lm
- Ubiquitin-ribosomal protein eL40 fusion protein
Coloring options: