IL_9O3W_084

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CCUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9O3W|1|L5|U|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_084 not in the Motif Atlas

Homologous match to IL_8GLP_086

Geometric discrepancy: 0.0389

The information below is about IL_8GLP_086

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9O3W|1|L5|C|2302
9O3W|1|L5|C|2303
9O3W|1|L5|U|2304
9O3W|1|L5|U|2305
9O3W|1|L5|G|2306
9O3W|1|L5|A|2307
9O3W|1|L5|A|2308
9O3W|1|L5|G|2309
*
9O3W|1|L5|U|2329
9O3W|1|L5|G|2330
9O3W|1|L5|G|2331
9O3W|1|L5|A|2332
9O3W|1|L5|G|2333

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large ribosomal subunit protein uL4

Chain LY

Large ribosomal subunit protein uL24

Chain Le

Large ribosomal subunit protein eL32