IL_9O3W_115
3D structure
- PDB id
- 9O3W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG
- Length
- 16 nucleotides
- Bulged bases
- 9O3W|1|L5|A2M|3785, 9O3W|1|L5|C|3791, 9O3W|1|L5|C|3810
- QA status
- Modified nucleotides: 5MC, A2M, OMG, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9O3W_115 not in the Motif Atlas
- Homologous match to IL_8GLP_307
- Geometric discrepancy: 0.0529
- The information below is about IL_8GLP_307
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.3
- Basepair signature
- cWW-L-tHH-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 9
Unit IDs
9O3W|1|L5|C|3781
9O3W|1|L5|5MC|3782
9O3W|1|L5|A|3783
9O3W|1|L5|A|3784
9O3W|1|L5|A2M|3785
9O3W|1|L5|U|3786
9O3W|1|L5|G|3787
9O3W|1|L5|C|3788
9O3W|1|L5|C|3789
9O3W|1|L5|U|3790
9O3W|1|L5|C|3791
9O3W|1|L5|OMG|3792
*
9O3W|1|L5|OMC|3808
9O3W|1|L5|G|3809
9O3W|1|L5|C|3810
9O3W|1|L5|G|3811
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Ln
- Small ribosomal subunit protein eS32
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: