IL_9O3W_149

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

9O3W|1|L5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_149 not in the Motif Atlas

Homologous match to IL_8GLP_164

Geometric discrepancy: 0.0301

The information below is about IL_8GLP_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9O3W|1|L5|G|4680
9O3W|1|L5|A|4681
9O3W|1|L5|U|4682
9O3W|1|L5|U|4683
9O3W|1|L5|A|4684
9O3W|1|L5|U|4685
*
9O3W|1|L5|A|4705
9O3W|1|L5|G|4706
9O3W|1|L5|A|4707
9O3W|1|L5|A|4708
9O3W|1|L5|U|4709
9O3W|1|L5|C|4710

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain LO

Large ribosomal subunit protein uL13

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein