IL_9O3W_182

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

9O3W|1|S2|G|113, 9O3W|1|S2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_182 not in the Motif Atlas

Homologous match to IL_9H3G_163

Geometric discrepancy: 0.1528

The information below is about IL_9H3G_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

9O3W|1|S2|U|112
9O3W|1|S2|G|113
9O3W|1|S2|G|114
9O3W|1|S2|U|115
*
9O3W|1|S2|A|348
9O3W|1|S2|A|349

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SI

Small ribosomal subunit protein eS8

Chain SL

Small ribosomal subunit protein uS17