IL_9O3W_192

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GGG*CGAU(OMU)C

Length

9 nucleotides

Bulged bases

9O3W|1|S2|OMU|428

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_192 not in the Motif Atlas

Homologous match to IL_9H3G_175

Geometric discrepancy: 0.1404

The information below is about IL_9H3G_175

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9O3W|1|S2|G|411
9O3W|1|S2|G|412
9O3W|1|S2|G|413
*
9O3W|1|S2|C|424
9O3W|1|S2|G|425
9O3W|1|S2|A|426
9O3W|1|S2|U|427
9O3W|1|S2|OMU|428
9O3W|1|S2|C|429

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SJ

Small ribosomal subunit protein uS4

Chain SX

Small ribosomal subunit protein uS12