IL_9O3W_206

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

9O3W|1|S2|A2M|668

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_206 not in the Motif Atlas

Homologous match to IL_9H3G_189

Geometric discrepancy: 0.0543

The information below is about IL_9H3G_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.3

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

6

Unit IDs

9O3W|1|S2|G|665
9O3W|1|S2|U|666
9O3W|1|S2|U|667
9O3W|1|S2|A2M|668
9O3W|1|S2|A|669
9O3W|1|S2|A|670
9O3W|1|S2|A|671
*
9O3W|1|S2|U|1161
9O3W|1|S2|C|1162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SX

Small ribosomal subunit protein uS12

Chain Sa

Small ribosomal subunit protein eS26