IL_9O3W_236

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

G(UY1)G*CC

Length

5 nucleotides

Bulged bases

9O3W|1|S2|UY1|1326

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_236 not in the Motif Atlas

Homologous match to IL_9PN5_203

Geometric discrepancy: 0.0636

The information below is about IL_9PN5_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9O3W|1|S2|G|1325
9O3W|1|S2|UY1|1326
9O3W|1|S2|G|1327
*
9O3W|1|S2|C|1502
9O3W|1|S2|C|1503

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

Small ribosomal subunit protein eS10

Chain Sd

Small ribosomal subunit protein uS14