IL_9O3W_250

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

9O3W|1|S2|A|1580, 9O3W|1|S2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|S2|G|1550
9O3W|1|S2|U|1551
9O3W|1|S2|G|1552
9O3W|1|S2|C|1553
9O3W|1|S2|C|1554
9O3W|1|S2|U|1555
9O3W|1|S2|A|1556
9O3W|1|S2|C|1557
9O3W|1|S2|C|1558
*
9O3W|1|S2|G|1577
9O3W|1|S2|U|1578
9O3W|1|S2|A|1579
9O3W|1|S2|A|1580
9O3W|1|S2|C|1581
9O3W|1|S2|C|1582

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SK

Small ribosomal subunit protein eS10

Chain SU

Small ribosomal subunit protein uS10

Chain Sd

Small ribosomal subunit protein uS14